Relocation expenses deducted from salary but not deducted from form 16

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  1. Hi team, I had joined a company which had given me transportation expense and also had given me 15 days accommodation in a hotel. When I left this company they deducted all these expenses from my salary and in net I got around 90000 as salary from them. However in the form 16 they have not made these deductions and hence according to it I am getting around 150000 as salary. is this correct. Shouldn't the component they have taken back be excluded from form 16 as well. Should I pay tax on the salary I never received.

    Please let me know if I can deduct that component from my salary while filing tax return and if yes then how??
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